Welcome to Metafitch’s documentation!#
Installation#
To install Chronumental using pip, run:
pip install metafitch
Usage#
Metafitch
usage: metafitch [-h] -t TREE -m METADATA -o OUTPUT [-f FIELDS] [-q ID_FIELD]
[-a]
Named Arguments#
- -t, --tree
Newick tree
- -m, --metadata
Metadata file
- -o, --output
Output file
- -f, --fields
Comma-separated to be used
- -q, --id_field
Field to use as ID
- -a, --tolerate_ambiguity
Tolerate ambiguity in the reconstructions
Default: False